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A list of all the posts and pages found on the site. For you robots out there, there is an XML version available for digesting as well.
Pages
Posts
portfolio
publications
Prion protein is required for tumor necrosis factor alpha (TNFα)-triggered nuclear factor kappa B (NF-κB) signaling and cytokine production
Published in Journal of Biological Chemistry, 2017
Baseline Sequencing Surveillance of Public Clinical Testing, Hospitals, and Community Wastewater Reveals Rapid Emergence of SARS-CoV-2 Omicron Variant of Concern in Arizona, USA
Published in mBio, American Society for Microbiology, 2023
Longitudinal dynamics of the nasopharyngeal microbiome in response to SARS-CoV-2 Omicron variant and HIV infection in Kenyan women and their children
Published in mSystems, American Society for Microbiology, 2025
Optimizing Nextflow-based Software on Shared HPC Resources: A Case Study with make_lastz_chains
Published in US Research Software Engineer Association (US-RSE), 2025
Provisioning a Large-Scale AI Platform Composed of Intel Gaudi2 Accelerators at Arizona State University
Published in Practice and Experience in Advanced Research Computing (PEARC), 2026
Ten Practices for Refactoring Scientific Pipelines to nf-core DSL2 on Shared Slurm HPC
Published in US Research Software Engineer Association (US-RSE), 2026
talks
A DNA Criticality-Detector Circuit in E. coli for Automatic Medicine-Dosage Thresholds
Published:
Slides and poster presentation for Team WHU-China’s synthetic-biology project — a DNA criticality-detector circuit in E. coli designed as an automatic medicine-dosage threshold for addressing human dental caries. Awarded a Silver Medal.
A Clinical Decision Support System Based on Prescription Drug Monitoring Programs for Patient Pain Management
Published:
Poster proposing a Clinical Decision Support System (CDSS) built on Prescription Drug Monitoring Programs (PDMPs) to support patient pain management, developed during a research affiliation at Mayo Clinic.
HPL (Linpack) and Other Popular Benchmarks on Heterogeneous HPC Clusters
Published:
Presentation on running HPL (Linpack) and other popular benchmarks across heterogeneous HPC clusters, and interpreting the results for capacity and performance planning.
Tuning Workflow Management Systems for Shared HPC Resources
Published:
Presentation on tuning workflow-management systems and their scheduling behavior for shared, multi-tenant HPC resources.
teaching
Undergraduate Machine Learning Curriculum (MAT 400-level)
Undergraduate course, Arizona State University, School of Mathematical and Statistical Sciences, 2021
Designed an undergraduate machine learning curriculum (MAT 400-level) that has been taught at Arizona State University since Fall 2021.
Certified Instructor, The Carpentries
Workshops, The Carpentries, 2024
Certified Instructor with The Carpentries (2024 – present), teaching foundational computing and data skills to researchers through hands-on workshops.
Mentor — Tuning Workflow Management Systems on HPC
Mentorship, Cyberinfrastructure Community-wide Mentorship Network (CCMNet), 2026
Mentor in the CCMNet mentorship program, leading a project on tuning workflow-management systems on HPC (2026).