Publications

You can also find my articles on my Google Scholar profile.

Journal Articles

Longitudinal dynamics of the nasopharyngeal microbiome in response to SARS-CoV-2 Omicron variant and HIV infection in Kenyan women and their children

Published in mSystems, American Society for Microbiology, 2025

Baseline Sequencing Surveillance of Public Clinical Testing, Hospitals, and Community Wastewater Reveals Rapid Emergence of SARS-CoV-2 Omicron Variant of Concern in Arizona, USA

Published in mBio, American Society for Microbiology, 2023

Prion protein is required for tumor necrosis factor alpha (TNFα)-triggered nuclear factor kappa B (NF-κB) signaling and cytokine production

Published in Journal of Biological Chemistry, 2017

Conference Papers & Presentations

Ten Practices for Refactoring Scientific Pipelines to nf-core DSL2 on Shared Slurm HPC

Published in US Research Software Engineer Association (US-RSE), 2026

Provisioning a Large-Scale AI Platform Composed of Intel Gaudi2 Accelerators at Arizona State University

Published in Practice and Experience in Advanced Research Computing (PEARC), 2026

Optimizing Nextflow-based Software on Shared HPC Resources: A Case Study with make_lastz_chains

Published in US Research Software Engineer Association (US-RSE), 2025